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Posts Tagged ‘biology’

Mutiny on a Chromosome

Saturday, December 20th, 2008

In Darwin’s time, it was believed that selection occurs at the level of an individual – that an entire creature is either selected or not. But as we learn more about what we are made of, we realize that the entire concept of an individual is somewhat illusory. Every macro-creature is not a stand-alone individual but rather a construction of millions of smaller transitory creatures that use its body as a vessel. The only way in which these creatures are working towards a common goal is in protecting this body from foreign invaders. The genes, the true residents of the body, are here only to make it to the next generation. They don’t necessarily care if other genes on parallel loci make it with them or not; they simply care about themselves.

To accomplish their goal, they network with each other in a complex hierarchy. We can compare the workings of this network to that of a corporation. Just like companies have CEOs, executives, managers, and workers to look after their daily operations, the body has various genes working at different levels of control. This hierarchy in the body is called its pleiotropy. The senior genes have the power to shut down, change, suspend, or accelerate operations based on the needs of the body. This system allows the “critical stages” of development as discussed in a previous article.

In corporations, several people work together to accomplish something an individual cannot accomplish by themselves. These genes in our bodies are doing the same thing. By working in a network, the composite bodies of these genes accomplish seemingly magical tasks – such as thought and communication. On a broad scale, all bodies involved in the network affect the workings of all other bodies surrounding them, quite intimately.

The nucleus of all somatic cells in the body contain two pairs of genes – they are diploid. One pair from the father and one from the mother. The only cells in the body that are haploid (one set of genes) are the sex cells. Textbooks teach that the genes that make it to these cells are there by “random selection”. But of course we know that is not how it works. In reality, every gene is fighting for its place on a chromosome. This is called it’s ‘meiotic drive’ – it’s drive to be included in the process of meiosis.

The fight can rise to such dramatic proportions that some genes could even take a position that is damaging to other genes, or even the rest of the cell. In “The Extended Phenotype”, Richard Dawkins calls such genes ‘outlaws’ (not his term originally). It is in the interest of the rest of the genes of the cell to subdue this outlaw. So here, we see a collective effort emerge between genes at other loci to make sure that the outlaw is not selected. But on the other hand, any outlaw that can somehow beat the system is greatly increasing its chances of making it to the next generation, so selection would certainly favour it greatly.

Things become more interesting however when outlaws appear on sex chromosomes. Any driving gene on an X or Y chromosome, could easily alter sex ratios drastically and hence even lead a population to it’s demise. If a Y-driving gene is successful enough, the next generation will see only males being born (in mammals for example) leaving them no one to mate with. This method has also been tested as a weapon against pests. In labs and simulations, the introduction of an intentional outlaw driving towards a particular sex, destroyed the entire population in as few as four generations.

Mud Dauber WaspThe workings in nature of one such outlaw have been witnessed in mud-daubing wasps. The females of this species build their own nests, lay a prey in it for their new-borns to feed upon, lay their eggs on the already dead or dying prey, seal the nest, and then begin the cycle again. As opposed to most other wasps, the males here are also present at the laying and in fact, during it, force the female into a strange ritual dubbed ‘holding’. The whole process begins when the female, having already laid the prey in her nest, goes head first into it with her abdomen facing outside. The male, who is outside, then copulates with her in this position. Then the female turns around, pops her head outwards from the nest and faces her abdomen inside it. She feels for the prey with the tip of her abdomen as if about to lay her egg. At this point, the male grabs her head with his forelegs and proceeds to pull her antennae outwards for about half a minute, to prevent the lady from dropping her egg just yet. Then the female again turns around and copulates with the male, only to turn around again and make another attempt to lay her egg. The male does the same thing. This repeats several times until the female finally gets to lay her egg.

It is hypothesized that the male here is trying to influence the sex of the egg. In Hymenoptera, unfertilized eggs usually result in males and fertilized ones in females. So perhaps by not letting the female lay her egg immediately, the male is trying the make sure it has time to fertilize in the oviduct, or perhaps he is trying to overflow her internal tracts with sperm, so the egg has more of a chance of fertilizing. Both of these actions would lead to a greater chance of new born being a female, giving the male more mating opportunities. Of course, the resistance of the female is necessary, not only because more unfertilized eggs mean more males for her, but also because without it, the entire population might perish.

In ways like these, outlaw genes and other interesting types (segregation distorters, other germ-line replicatiors) cause strange behaviours in our world, and make evolution seem even more implausible. But as always, there are breakthroughs and paradigm-shifts in Science that show us the way. “The Extended Phenotype” is a brilliant book, and deals with several such cases, and all in all, gives one a wonderful perspective of genetics. Dawkins had said before that he considers this book to be his best work; I don’t know if he still considers that true, but if you’re looking to do some interesting reading on evolution, there is no better book I could recommend than this.

Where is the “theo” in biology textbooks?

Monday, August 25th, 2008

One thing I’ve realized after years of following the ID movement is that William Dembski can best be described as a gift that keeps on giving. Take a look at this, for example:

Here are some quotes from seven of Miller’s biology textbooks, textbooks underwritten with your tax dollars. As you read these quotes, ask yourself where is the “theo” in Miller’s “theoevo.”(1) “[E]volution works without either plan or purpose … Evolution is random and undirected.”
Biology, by Kenneth R. Miller & Joseph S. Levine, pg. 658 (1st edition, Prentice Hall, 1991)

…(6) “Darwin knew that accepting his theory required believing in philosophical materialism, the conviction that matter is the stuff of all existence and that all mental and spiritual phenomena are its by-products. Darwinian evolution was not only purposeless but also heartless–a process in which the rigors of nature ruthlessly eliminate the unfit. Suddenly, humanity was reduced to just one more species in a world that cared nothing for us. The great human mind was no more than a mass of evolving neurons. Worst of all, there was no divine plan to guide us.”
Biology: Discovering Life, by Joseph S. Levine & Kenneth R. Miller (1st edition, D.C. Heath and Co., 1992), pg. 152

Dembski is terribly wrong on so many counts that he has to be either terribly ignorant or is simply obfuscating the facts to pander to his religious base. By asking where is the “god speak” in a biology textbook, Dembski has shown us (yes, old news) that ID is all about shoving god into science and down the throats of children, destroying science education in the process. What Dembski did not realize is that there is no “god talk” nor “atheist talk” in the theory of evolution itself because  the theory does not make any claim whatsoever about the existence or non-existence of a god. God isn’t mentioned in the description of the theory of gravitation, yet we don’t see IDists demanding to know where the “theo” is in gravity. There is no mention of religion in the weather forecast either and no ID creationist so far has claimed that god should be involved in the description of weather cycles.

Although Miller is a devout Catholic, he keeps his personal religious views out of the way in a scientific textbook. This has nothing to do with Miller accepting or rejecting the theistic god. He is merely writing about the theory of evolution the same way that someone would write about the theory of gravitation. Religion simply has nothing to do with it, and this is the very idea that Dembski refuses to comprehend. The IDists want to shove their narrow, fundamentalist version of religion into science, and they do not understand why current science textbooks do not read like the Bible. Once god is pushed into science, what next? Oh, and which god? Whose interpretation of what holy book? Fred Phelps’ version? Will kids be forced to learn about Yahweh creating man from dust? Will they also learn about Zeus shooting thunderbolts from the sky? Where are we to draw the line?

Of course, Miller is free to talk about his religious beliefs and publish popular books about what he thinks the role of his religion plays in science, the same way Richard Dawkins can promote the idea that evolution is incompatible with theistic belief. No matter how much Ben Stein would like you to think otherwise, nobody is trying to persecute and ‘expel’ Miller for his theistic evolutionary views. Evolutionary theory is discussed in science textbooks without “god-speak” because there is no need to invoke a supernatural being to explain scientific concepts. If Dembski wants Miller to include the “theo” in evolution, he should push for “theo” to be introduced in every scientific field and in every other area of study as well, to replace materialistic explanations with the theistic understanding that nature and human beings are created by God.

Wait – that is the Wedge Strategy. The IDists actually do want to do that after all.

Be afraid. Be very, very afraid.